PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472978
Common NameARALYDRAFT_472978
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 228aa    MW: 24503.2 Da    PI: 8.3939
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472978genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-0580102123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ykC+ C+ksFs+   L  H  +H
   472978  80 YKCSVCDKSFSSYQALGGHKASH 102
              9***********99999998887 PP

2zf-C2H2110.0013137156120
              EEETTTTEEESSHHHHHHHH CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
              ++C++C+ksF++   L  H 
   472978 137 HVCTICNKSFPSGQALGGHK 156
              79*********988776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.0E-1380104IPR007087Zinc finger, C2H2
SMARTSM003550.003480102IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.1E-980102No hitNo description
PROSITE profilePS5015710.28480107IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-480102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576672.1E-9132159No hitNo description
PfamPF139121.6E-13137161IPR007087Zinc finger, C2H2
SMARTSM003550.036137159IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411137164IPR007087Zinc finger, C2H2
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM  60
LLARDNRQPP PPPAVEKLSY KCSVCDKSFS SYQALGGHKA SHRKNLSQTH SGGGGDDQST  120
SSATTTSAVT TGSGKSHVCT ICNKSFPSGQ ALGGHKRCHY EGNNNNTSSV SNSEGAGSTS  180
HVSSSHRGFD LNIPPIPEFS TVNGDDEVMS PMPAKKARFD FPVKLQL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0123750.0AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence.
GenBankAF2503360.0AF250336.1 Arabidopsis thaliana zinc finger protein STZ/ZAT10 (STZ/ZAT10) mRNA, complete cds.
GenBankAY0349980.0AY034998.1 Arabidopsis thaliana putative salt-tolerance zinc finger protein (At1g27730) mRNA, complete cds.
GenBankAY0630060.0AY063006.1 Arabidopsis thaliana putative salt-tolerance zinc finger protein (At1g27730) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankX955730.0X95573.1 A.thaliana mRNA for salt-tolerance zinc finger protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893488.11e-169hypothetical protein ARALYDRAFT_472978
SwissprotQ962891e-151ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLD7KBU21e-169D7KBU2_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.1__2932__AT1G27730.11e-169(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-131salt tolerance zinc finger